{
  "_id": "6a2ba9655783985943194021",
  "Package": "metalcor",
  "Title": "Meta-Analysis of Correlated Genetic Association Studies",
  "Version": "1.0.0",
  "Authors@R": "c(\nperson(given = \"Alejandro\",\nfamily = \"Ochoa\",\nrole = c(\"aut\", \"cre\"),\nemail = \"alejandro.ochoa@duke.edu\",\ncomment = c(ORCID = \"0000-0003-4928-3403\")),\nperson(given = \"Tiffany\",\nfamily = \"Tu\",\nrole = c(\"aut\"),\nemail = \"tiffany.tu@duke.edu\",\ncomment = c(ORCID = \"0000-0002-9357-6660\"))\n)",
  "Description": "The main function performs meta-analysis of genetic\nassociation study summary statistics that may be correlated due\nto cryptic relatedness or other confounders, generalizing\ninverse variance weighted methods.  The function that estimates\nthe correlation structure is also provided standalone.  Another\nkey innovation, the estimation of the correlation parameter\nfrom the median product of correlated standard normal\nvariables, is provided, as well as a complete set of functions\nfor their underlying distribution: density, cumulative,\nquantile, and random deviates.  Described in Tu and Ochoa\n(2025) <doi:10.1101/2025.05.10.653279>.",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "8.0.0",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/OchoaLab/metalcor",
  "BugReports": "https://github.com/OchoaLab/metalcor/issues",
  "Repository": "https://ochoalab.r-universe.dev",
  "Date/Publication": "2026-05-06 19:19:57 UTC",
  "RemoteUrl": "https://github.com/ochoalab/metalcor",
  "RemoteRef": "HEAD",
  "RemoteSha": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-12 06:35:52 UTC",
    "User": "root"
  },
  "Author": "Alejandro Ochoa [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-4928-3403>),\nTiffany Tu [aut] (ORCID: <https://orcid.org/0000-0002-9357-6660>)",
  "Maintainer": "Alejandro Ochoa <alejandro.ochoa@duke.edu>",
  "MD5sum": "625a7a350c89e31c5ba8ad92faf67b6e",
  "_user": "ochoalab",
  "_type": "src",
  "_file": "metalcor_1.0.0.tar.gz",
  "_fileid": "309da626b4e9c57a9a720eb784d2fa80604729da2235d533e28e0a04971f871d",
  "_filesize": 409712,
  "_sha256": "309da626b4e9c57a9a720eb784d2fa80604729da2235d533e28e0a04971f871d",
  "_created": "2026-06-12T06:35:52.000Z",
  "_published": "2026-06-12T06:38:29.052Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 80972888691,
      "time": 115,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7584764158"
    },
    {
      "job": 80972888703,
      "time": 124,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7584766540"
    },
    {
      "job": 80972888721,
      "time": 91,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7584757024"
    },
    {
      "job": 80972888743,
      "time": 100,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7584760166"
    },
    {
      "job": 80972550054,
      "time": 154,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7584733733"
    },
    {
      "job": 80972888709,
      "time": 104,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7584761405"
    },
    {
      "job": 80972888724,
      "time": 100,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7584760823"
    },
    {
      "job": 80972888700,
      "time": 83,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7584755927"
    },
    {
      "job": 80972888741,
      "time": 81,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7584755692"
    }
  ],
  "_buildurl": "https://github.com/r-universe/ochoalab/actions/runs/27399031616",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/ochoalab/metalcor",
  "_commit": {
    "id": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
    "author": "Alejandro Ochoa Garcia <alexviiiag@gmail.com>",
    "committer": "Alejandro Ochoa Garcia <alexviiiag@gmail.com>",
    "message": "updated cran-comments\n",
    "time": 1778095197
  },
  "_maintainer": {
    "name": "Alejandro Ochoa",
    "email": "alejandro.ochoa@duke.edu",
    "login": "alexviiia",
    "orcid": "0000-0003-4928-3403",
    "description": "Statistical geneticist, computational biologist.  Well-rounded nerd, also love languages and music.",
    "uuid": 12603341
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "tidyselect",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "ochoalab",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-19",
      "n": 6
    }
  ],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "alexviiia",
      "count": 6,
      "uuid": 12603341
    }
  ],
  "_userbio": {
    "uuid": 41968176,
    "type": "organization",
    "name": "Ochoa Lab at Duke StatGen",
    "description": "Research in statgen, biostats, compbio"
  },
  "_downloads": {
    "count": 464,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/metalcor"
  },
  "_devurl": "https://github.com/ochoalab/metalcor",
  "_searchresults": 16,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/metalcor.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/ochoalab/metalcor",
  "_realowner": "ochoalab",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2026-05-12"
    }
  ],
  "_exports": [
    "dprodcor",
    "estimate_R",
    "metalcor",
    "pprodcor",
    "qprodcor",
    "rho_from_median",
    "rprodcor"
  ],
  "_help": [
    {
      "page": "estimate_R",
      "title": "Estimate Covariance Matrix of Study Z-scores",
      "topics": [
        "estimate_R"
      ]
    },
    {
      "page": "metalcor",
      "title": "Meta-Analysis of Correlated Genetic Association Studies",
      "topics": [
        "metalcor"
      ]
    },
    {
      "page": "prodcor",
      "title": "The Correlated Standard Normal Product Distribution",
      "topics": [
        "dprodcor",
        "pprodcor",
        "prodcor",
        "qprodcor",
        "rprodcor"
      ]
    },
    {
      "page": "rho_from_median",
      "title": "Estimated Correlations from Sample Medians of the Correlated Standard Normal Product Distribution",
      "topics": [
        "rho_from_median"
      ]
    }
  ],
  "_pkglogo": "https://github.com/ochoalab/metalcor/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/ochoalab/metalcor/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "dplyr",
    "generics",
    "glue",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "R6",
    "rlang",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "metalcor.Rmd",
      "filename": "metalcor.html",
      "title": "metalcor",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Simulate correlated studies for test",
        "Perform meta-analysis",
        "Only estimating study covariance",
        "Under the hood: the correlated Standard Normal product distribution"
      ],
      "created": "2026-05-06 02:02:49",
      "modified": "2026-05-06 02:02:49",
      "commits": 1
    }
  ],
  "_score": 3.9030899869919438,
  "_indexed": true,
  "_nocasepkg": "metalcor",
  "_universes": [
    "ochoalab",
    "alexviiia"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-06-12T06:37:46.000Z",
      "distro": "noble",
      "commit": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
      "fileid": "563f16d72416e983b48eecae8cfb208e4fc73de9eea8a7c1f831984d5b1f8d28",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ochoalab/actions/runs/27399031616"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-06-12T06:37:51.000Z",
      "distro": "noble",
      "commit": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
      "fileid": "b2b09e2efef874255de8a83b34eb6c58774841c7e262d6b542973acb4b52aaf8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ochoalab/actions/runs/27399031616"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-06-12T06:37:19.000Z",
      "commit": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
      "fileid": "c6c53e0013ff287db51462659f52d23864c74a22d33976763305eba239497bf9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ochoalab/actions/runs/27399031616"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-06-12T06:37:30.000Z",
      "commit": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
      "fileid": "2d51e5b5453b8b5f7daf990cdd203765362a0231901fc71194022231d0c41578",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ochoalab/actions/runs/27399031616"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-06-12T06:37:48.000Z",
      "commit": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
      "fileid": "c787949915c215bc72ef29fb22e40e3fe4f67845af72c3be41f711619aaff219",
      "status": "success",
      "buildurl": "https://github.com/r-universe/ochoalab/actions/runs/27399031616"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-06-12T06:37:26.000Z",
      "commit": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
      "fileid": "58cc716329571fb4eae922a7d36018c791ac8e1f39142510891394ed60524bc4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ochoalab/actions/runs/27399031616"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-06-12T06:37:05.000Z",
      "commit": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
      "fileid": "5c5914bba93a176bfdb932e19df647a94e6a292b7b58b059ca80bb2813c95bfc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ochoalab/actions/runs/27399031616"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-06-12T06:37:04.000Z",
      "commit": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
      "fileid": "65fcb85c651a18fbffd824293b43688cfaf6cceafdcaf0b0c90c91b448ae0b89",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ochoalab/actions/runs/27399031616"
    }
  ]
}