{
  "_id": "6a1023eeacfb0bcc41c8d981",
  "Package": "metalcor",
  "Title": "Meta-Analysis of Correlated Genetic Association Studies",
  "Version": "1.0.0",
  "Authors@R": "c(\nperson(given = \"Alejandro\",\nfamily = \"Ochoa\",\nrole = c(\"aut\", \"cre\"),\nemail = \"alejandro.ochoa@duke.edu\",\ncomment = c(ORCID = \"0000-0003-4928-3403\")),\nperson(given = \"Tiffany\",\nfamily = \"Tu\",\nrole = c(\"aut\"),\nemail = \"tiffany.tu@duke.edu\",\ncomment = c(ORCID = \"0000-0002-9357-6660\"))\n)",
  "Description": "The main function performs meta-analysis of genetic\nassociation study summary statistics that may be correlated due\nto cryptic relatedness or other confounders, generalizing\ninverse variance weighted methods.  The function that estimates\nthe correlation structure is also provided standalone.  Another\nkey innovation, the estimation of the correlation parameter\nfrom the median product of correlated standard normal\nvariables, is provided, as well as a complete set of functions\nfor their underlying distribution: density, cumulative,\nquantile, and random deviates.  Described in Tu and Ochoa\n(2025) <doi:10.1101/2025.05.10.653279>.",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "8.0.0",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/OchoaLab/metalcor",
  "BugReports": "https://github.com/OchoaLab/metalcor/issues",
  "Repository": "https://ochoalab.r-universe.dev",
  "Date/Publication": "2026-05-06 19:19:57 UTC",
  "RemoteUrl": "https://github.com/ochoalab/metalcor",
  "RemoteRef": "HEAD",
  "RemoteSha": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-13 10:57:36 UTC",
    "User": "root"
  },
  "Author": "Alejandro Ochoa [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-4928-3403>),\nTiffany Tu [aut] (ORCID: <https://orcid.org/0000-0002-9357-6660>)",
  "Maintainer": "Alejandro Ochoa <alejandro.ochoa@duke.edu>",
  "MD5sum": "6926fdf8ea9bdd09000bc44d44a8d3a5",
  "_user": "ochoalab",
  "_type": "src",
  "_file": "metalcor_1.0.0.tar.gz",
  "_fileid": "282af9c7168db51279a7fef6d30f18c7012ea799ac006dab772cf8be2e20a506",
  "_filesize": 409867,
  "_sha256": "282af9c7168db51279a7fef6d30f18c7012ea799ac006dab772cf8be2e20a506",
  "_created": "2026-05-13T10:57:36.000Z",
  "_published": "2026-05-22T09:37:50.843Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77354164322,
      "time": 133,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6968261364"
    },
    {
      "job": 77354164581,
      "time": 123,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6968258122"
    },
    {
      "job": 77354164567,
      "time": 104,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6968249627"
    },
    {
      "job": 77354164428,
      "time": 70,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6968238607"
    },
    {
      "job": 77354164109,
      "time": 181,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6968213670"
    },
    {
      "job": 77354163789,
      "time": 114,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7157435310"
    },
    {
      "job": 77354164421,
      "time": 110,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6968251845"
    },
    {
      "job": 77354164618,
      "time": 90,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6968246096"
    },
    {
      "job": 77354164510,
      "time": 99,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6968248364"
    }
  ],
  "_buildurl": "https://github.com/r-universe/ochoalab/actions/runs/25794633488",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/ochoalab/metalcor",
  "_commit": {
    "id": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
    "author": "Alejandro Ochoa Garcia <alexviiiag@gmail.com>",
    "committer": "Alejandro Ochoa Garcia <alexviiiag@gmail.com>",
    "message": "updated cran-comments\n",
    "time": 1778095197
  },
  "_maintainer": {
    "name": "Alejandro Ochoa",
    "email": "alejandro.ochoa@duke.edu",
    "login": "alexviiia",
    "orcid": "0000-0003-4928-3403",
    "uuid": 12603341
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "tidyselect",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "ochoalab",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-19",
      "n": 6
    }
  ],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "alexviiia",
      "count": 6,
      "uuid": 12603341
    }
  ],
  "_userbio": {
    "uuid": 41968176,
    "type": "organization",
    "name": "Ochoa Lab at Duke StatGen",
    "description": "Research in statgen, biostats, compbio"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/metalcor"
  },
  "_devurl": "https://github.com/ochoalab/metalcor",
  "_searchresults": 16,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/metalcor.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/ochoalab/metalcor",
  "_realowner": "ochoalab",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2026-05-12"
    }
  ],
  "_exports": [
    "dprodcor",
    "estimate_R",
    "metalcor",
    "pprodcor",
    "qprodcor",
    "rho_from_median",
    "rprodcor"
  ],
  "_help": [
    {
      "page": "estimate_R",
      "title": "Estimate Covariance Matrix of Study Z-scores",
      "topics": [
        "estimate_R"
      ]
    },
    {
      "page": "metalcor",
      "title": "Meta-Analysis of Correlated Genetic Association Studies",
      "topics": [
        "metalcor"
      ]
    },
    {
      "page": "prodcor",
      "title": "The Correlated Standard Normal Product Distribution",
      "topics": [
        "dprodcor",
        "pprodcor",
        "prodcor",
        "qprodcor",
        "rprodcor"
      ]
    },
    {
      "page": "rho_from_median",
      "title": "Estimated Correlations from Sample Medians of the Correlated Standard Normal Product Distribution",
      "topics": [
        "rho_from_median"
      ]
    }
  ],
  "_pkglogo": "https://github.com/ochoalab/metalcor/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/ochoalab/metalcor/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "dplyr",
    "generics",
    "glue",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "R6",
    "rlang",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "metalcor.Rmd",
      "filename": "metalcor.html",
      "title": "metalcor",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Simulate correlated studies for test",
        "Perform meta-analysis",
        "Only estimating study covariance",
        "Under the hood: the correlated Standard Normal product distribution"
      ],
      "created": "2026-05-06 02:02:49",
      "modified": "2026-05-06 02:02:49",
      "commits": 1
    }
  ],
  "_score": 3.9030899869919438,
  "_indexed": true,
  "_nocasepkg": "metalcor",
  "_universes": [
    "ochoalab",
    "alexviiia"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-13T10:59:55.000Z",
      "distro": "noble",
      "commit": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
      "fileid": "60ee47559958a39271da435d12518e5d00bf14ddbca3d4801b85beb38e887738",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ochoalab/actions/runs/25794633488"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-13T10:59:45.000Z",
      "distro": "noble",
      "commit": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
      "fileid": "076d92147bc403915e3fb27026606c8f17c5f4f4eadebe681450d43c317a2ac2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ochoalab/actions/runs/25794633488"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-05-13T10:59:21.000Z",
      "commit": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
      "fileid": "d900fbde29680eb5339482400ee78a48a7cef75cffcae6d33a3cd46b14cc78a7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ochoalab/actions/runs/25794633488"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-05-13T10:58:54.000Z",
      "commit": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
      "fileid": "b905fa9b20e001b071a84558037b14c0bf9fdc3e62d6a3d0858430751e33c300",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ochoalab/actions/runs/25794633488"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-05-13T10:59:13.000Z",
      "commit": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
      "fileid": "9b38885e9e5d83560cc92a1db80395bbf7fe61ba9abb1a0e7da8b77d7350d953",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ochoalab/actions/runs/25794633488"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-05-13T10:59:03.000Z",
      "commit": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
      "fileid": "8c52e8a3c135ed8181acc0170647341980cddafa02bf6ae344fb3a842bde603a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ochoalab/actions/runs/25794633488"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-05-13T10:59:04.000Z",
      "commit": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
      "fileid": "197cdc20d5fc5ce003e586042b2f48a5474a999cf3dcfd53b22a7184638263d4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ochoalab/actions/runs/25794633488"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-05-22T09:37:29.000Z",
      "commit": "2c374f19fd138614c2c7b74e82f862d9a02cbd3d",
      "fileid": "44feccfbc09e4226f4c0a347b777e3a4be51d8c30c1fb534fd11cdd42bc0e8a3",
      "status": "success",
      "buildurl": "https://github.com/r-universe/ochoalab/actions/runs/25794633488"
    }
  ]
}